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I tried every suggestion above and iayork suggestion was the one that actually worked Thanks iayork. I changed my shebang to:! Hey -- If anyone else has the problem where you've installed the app, but it won't run, try to alter the shebang, as described above ctrl-click SPE in the applications folder, open Contents, MacOS, then open SPE with textedit or some other editor, change the first line to!

Worked for me, hopefully it can help someone else too. Thanks for the help, all. This is a great app for OS X. Thanks much!!!! Couple quick questions: 1. The editor shows my code executing and prompting for input but I cannot type in the field. Who maintains the OS X port and is there documentation on how the build is done? Is there a "auto-ident" tool for SPE? Buba with spe and wx. In Ubuntu only, in windows work well.

Wrong wx version? I think that is a easy way to fix, gest switch the call to correct wx element, and I think that SPE should be in the same boat with ubuntu's wx version. Just installed the dmg. Upon opening SPE, it immediately crashes. I see the following error in my Console log: com. I tried to launch but it fails immediately.

Any chance you will produce a version for Snow Leopard? Jack The Mac version is done by Krzysztof Olczyk as written in the post. You better contact him to know if he could be convinced to release one. I doubt that Snow Leopard has anything to do with it All the difficulties installing seem to have to do with where you keep Python.

Python installations do not seem to be as standard on the Mac and it may have moved between OS versions. For instance if Snow Leopard runs 2. But it would also be different for folks who have upgraded Do 'which python' in a terminal, to find out where you have it, and change the!

One thing that is not so great on a Mac, which I guess will also be annoying on Linux: you open non-python files with 'os. WinDrawChem is a freeware two-dimensional molecule drawing program for Windows. There is also additional copyright information. These files are also included in the distribution.

PicXAA is a probabilistic non-progressive alignment algorithm that finds protein multiple sequence alignments with maximum expected accuracy. Byung-Jun Yoon. The editor supports the MCDL format, in which structures are presented in compact canonical form and is capable of restoring bond orders as well as of managing atom and bond drawing overlap.

A small database of cage and large cyclic fragment is used for optimal representation of difficult-to-draw molecules. Molecules , 11 4 , ; doi Trepalin, Alexander V. Yarkov , Igor V.

Pletnev and Andrei A. JMolDraw is a small Java-Applet for drawing organic structures on your computer. Thomas Seidel. Unfortunately Strider will not run on recent Macs, as it requires a "Classic" environment. Will work great on older machines Linux Software for Molecular Biology and Bioinformatics Bio-Linux Bio-Linux is a fully featured, powerful, configurable and easy to maintain bioinformatics workstation.

Bio-Linux provides more than bioinformatics programs on an Ubuntu Linux base. There is a graphical menu for bioinformatics programs, as well as easy access to the Bio-Linux bioinformatics documentation system and sample data useful for testing programs.

You can also install Bio-Linux packages to handle new generation sequence data types BioPuppy BioPuppy is an minimal Linux OS and electronic workbench for bio-informatics and computational biology. EMBnet user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web.

Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. Other features: estimation of isoelectric point for proteins and primer design. EMBOSS is a free open source software set of high-quality sequence analysis programs mainly designed for the Unix operating system.

CLC Sequence Viewer CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.

Download is free of charge Gene Designer 2.



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